Deep stacked $200NL top pair w/ nut flush draw - raise flop?

[lowpockets]

Sorry about no converter. I have no reads on the villan, he sat down about 10 hands ago and doubled up immediately. I typically will raise or reraise on this flop with top pair and the nut flush draw. Yet, because it was a pretty scary board and we had some deap stacks I wasn't sure what to do on the turn or river here. Could I have gotten him out of the pot by betting knowing that he has top two?

PokerStars No-Limit Hold'em, $2 BB (5 handed) Hand History Converter Tool from FlopTurnRiver.com (Format: 2+2 Forums)

MP ($39.15)
Hero ($839.05)
SB ($198.75)
BB ($187.90)
UTG ($401)

Preflop: Hero is Button with A[img]/images/graemlins/heart.gif[/img], 3[img]/images/graemlins/heart.gif[/img].
<font color="#CC3333">UTG raises to $8</font>, <font color="#666666">1 fold</font>, Hero calls $8, <font color="#666666">1 fold</font>, BB calls $6.

Flop: ($25) K[img]/images/graemlins/heart.gif[/img], A[img]/images/graemlins/club.gif[/img], J[img]/images/graemlins/heart.gif[/img] <font color="#0000FF">(3 players)</font>
BB checks, <font color="#CC3333">UTG bets $15</font>, <font color="#CC3333">Hero raises to $78</font>, BB folds, UTG calls $63.

Turn: ($181) 5[img]/images/graemlins/spade.gif[/img] <font color="#0000FF">(2 players)</font>
UTG checks, Hero checks.

River: ($181) Q[img]/images/graemlins/spade.gif[/img] <font color="#0000FF">(2 players)</font>
UTG checks, Hero checks.

Final Pot: $181

Results in white below: <font color="#FFFFFF">
UTG has As Kc (two pair, aces and kings).
Hero has Ah 3h (one pair, aces).
Outcome: UTG wins $181. </font>

EDIT: Converted