FTOPS #3 ITM JJ in MP vs min/r

[Bikini Wax]

Not much of a MTT player and I have a dreadful fear of min raises especially from EP... I felt like I butchered this hand but I didn't know at which spot to aply pressure and how much, once he minbet the turn I ment to make it 9600 but it came out smaller... thoughts?

Full Tilt Poker Game #3216822750: FTOPS Event #3 (22694956), Table 132 - 800/1600 - Pot Limit Hold'em - 1:00:34 ET - 2007/08/11
Seat 1: Joao M (25,856)
Seat 2: bmf823 (19,004)
Seat 3: sebbau (24,947)
Seat 4: viper600 (31,076)
Seat 5: CamFlush (19,180)
Seat 6: Red Bikini (81,166)
Seat 7: Larkyns Dad (17,086)
Seat 8: rrrobins (9,872)
Seat 9: bigll (20,298)
bigll posts the small blind of 800
Joao M posts the big blind of 1,600
The button is in seat #8
*** HOLE CARDS ***
Dealt to Red Bikini [Jc Js]
bmf823 folds
sebbau folds
viper600 raises to 3,200
CamFlush folds
Red Bikini calls 3,200
Larkyns Dad folds
rrrobins folds
bigll folds
Joao M calls 1,600
*** FLOP *** [2s Qs 9c]
Joao M checks
viper600 checks
Red Bikini checks
*** TURN *** [2s Qs 9c] [Qc]
Joao M checks
viper600 has 15 seconds left to act
viper600 bets 1,600
Red Bikini has 15 seconds left to act
Red Bikini raises to 6,400
Joao M folds
viper600 has 15 seconds left to act
viper600 has requested TIME
viper600 calls 4,800
*** RIVER *** [2s Qs 9c Qc] [Td]
viper600 checks
Red Bikini checks
*** SHOW DOWN ***
Red Bikini shows [Jc Js] two pair, Queens and Jacks
viper600 mucks
Red Bikini wins the pot (23,200) with two pair, Queens and Jacks
*** SUMMARY ***
Total pot 23,200 | Rake 0
Board: [2s Qs 9c Qc Td]
Seat 1: Joao M (big blind) folded on the Turn
Seat 2: bmf823 didn't bet (folded)
Seat 3: sebbau didn't bet (folded)
Seat 4: viper600 mucked [Jd Ts] - two pair, Queens and Tens
Seat 5: CamFlush didn't bet (folded)
Seat 6: Red Bikini showed [Jc Js] and won (23,200) with two pair, Queens and Jacks
Seat 7: Larkyns Dad didn't bet (folded)
Seat 8: rrrobins (button) didn't bet (folded)
Seat 9: bigll (small blind) folded before the Flop