bottom set deep on draw heavy board - im lost

[ob1]

I just remembered this hand from last year, one of the hardest decisions ive had to make at a poker table.

game is 3-5-10 at northern california cardroom, cant remember the name. Any way, uncapped buy in, I come in for 2500 now have about 4000 on the table, villan covers.
He is really the only good player at the table and we have for some reason been getting into a lot of pots together, him taking the best of it mostly because he is directly to my left. He has been 3-betting pretty light to my late position raises ~1/3 of the time. I have not seen him make any huge laydowns in big pots and he tends to let the pot get a little too big this deep due to him overvaluing hands.

anyway, heres the hand
folds to me, I raise to 40 with 99. villan 3 bets to 200, blinds fold, i call.
flop comes a[img]/images/graemlins/diamond.gif[/img]q [img]/images/graemlins/spade.gif[/img]9 [img]/images/graemlins/spade.gif[/img]
i lead for 300 and villan raises min to 600. I make it 1600 and villan tanks for about 5 mins, someone calls the clock on him and he moves all in within 10 seconds. I was completely lost on what to do, i am slightly ahead of j [img]/images/graemlins/spade.gif[/img]10 [img]/images/graemlins/spade.gif[/img] , way ahead of aq and [censored] if he has aa or qq, i thought perhaps he may have k [img]/images/graemlins/spade.gif[/img]10/j [img]/images/graemlins/spade.gif[/img] also. thoughts? fwiw, villan knows that I have a hand here, as i have not messed with him too much oop like i said before. what do i do?