[Colt McCoy]

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One problem I'm having with SS is doing the heavy squats every single workout, I feel like I'm really using up my leg power. I'd like to do some running/biking/etc. on the off days, but 1) I'm so sore from the squats it's hard to even do it, and 2) if I do some hard leg cardio I feel like it takes away from my squat the next day.

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Not familiar with the SS reoutines, but you might try some form of microperiodization like Starr's program that has heavy/light/medium days throughout the week.